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["Table S14 DEGs related to peroxidase in six RNA-Seq data"]
["#ID","L01","L02","L03","L04","L05","L06","KOG_class","KOG_class_annotation","Swiss-Prot_annotation","eggNOG_class","eggNOG_class_annotation","NR_annotation"]
["Cotton_newGene_15678",0.769888,1.459229,0.868073,1.076659,1.003109,1.071711,"--","--","Peroxidase 27 (Precursor) GN=T4P13.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Protein CAJ1 [Gossypium arboreum]"]
["evm.TU.Gh_A01G1388",2.924868,2.180809,1.607663,4.464429,2.094064,2.267549,"--","--","L-ascorbate peroxidase 3, peroxisomal (Precursor) GN=M4E13.60 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","ascorbate peroxidase [Gossypium hirsutum] "]
["evm.TU.Gh_A01G1487",0.437821,0.193031,0.118838,0.143151,0.807674,0.01213,"--","--","Peroxidase 43 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_A02G1466",0.020926,0.044257,0.107345,0.033743,0.292903,0.795487,"--","--","Peroxidase 51 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 51 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A02G1648",0.743099,0.504028,0.467331,0.219663,0.193563,0.228106,"--","--","Probable L-ascorbate peroxidase 3 GN=APX3 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","R","General function prediction only","Ascorbate peroxidase isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A03G0199",0.476513,3.751396,4.790508,3.050463,2.990006,7.359631,"--","--","Peroxidase 4 {ECO:0000250|UniProtKB:Q42578} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 4 [Gossypium arboreum]"]
["evm.TU.Gh_A03G0200",0.190396,0.559452,1.49125,0.313277,0.665511,0.746902,"--","--","Peroxidase 4 {ECO:0000250|UniProtKB:Q42578} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=1","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_A05G0507",0.073254,0,0.04481,0,1.028693,0.245186,"--","--","Peroxidase 18 (Precursor) GN=F27C12.28 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_A05G2347",3.272943,2.774765,3.408371,1.99074,2.29664,1.667092,"--","--","Peroxidase 43 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_A05G3137",0.24654,0.186761,0.291646,0.089918,0.959271,0.488374,"[R]","General function prediction only","Alpha-dioxygenase 1 (Precursor) GN=T13O15.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Peroxidase superfamily protein isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A05G3239",2.527442,1.196918,0.303706,0.595439,1.42611,0.095036,"--","--","Peroxidase 47 (Precursor) GN=F17M5.180 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","G","Carbohydrate transport and metabolism","Peroxidase 47 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A06G0383",3.707459,5.025073,3.460493,3.287922,3.573296,2.271247,"--","--","L-ascorbate peroxidase T, chloroplastic (Precursor) GN=APXT OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","L-ascorbate peroxidase T, chloroplastic -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A06G0898",2.568267,1.955622,2.549935,1.77725,2.030408,1.368624,"[G]","Carbohydrate transport and metabolism","Peroxidase (Precursor) GN=PAP26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Bifunctional purple acid phosphatase 26 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A06G1006",0.014015,0.098696,0.064064,0.107517,0.412886,0.222095,"--","--","Peroxidase 12 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 12 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A07G0269",18.391848,15.819325,13.365828,25.927672,20.123077,25.474323,"[O]","Posttranslational modification, protein turnover, chaperones","Phospholipid hydroperoxide glutathione peroxidase, chloroplastic (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A08G0673",1.071935,1.19255,1.015009,0.954426,1.633295,1.120271,"[O]","Posttranslational modification, protein turnover, chaperones","Probable glutathione peroxidase 3, mitochondrial (Precursor) GN=GPX3 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Glutathione peroxidase 2 [Theobroma cacao] "]
["evm.TU.Gh_A08G0714",5.760814,6.805109,3.239552,2.419881,8.054171,2.890793,"--","--","Peroxidase 15 {ECO:0000303|PubMed:17936696} (Precursor) OS=Ipomoea batatas (Sweet potato) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 15 [Gossypium arboreum]"]
["evm.TU.Gh_A08G1813",0.745865,1.862489,1.395648,0.51233,1.265539,1.550687,"[J]","Translation, ribosomal structure and biogenesis","Nucleolar complex protein 2 homolog GN=At2g18220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","J","Translation, ribosomal structure and biogenesis","Peroxidase 31, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_A08G2028",0,0,0,0.053105,0.800517,0.045645,"--","--","Peroxidase 53 (Precursor) GN=MPH15.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","POD9 precursor [Gossypium hirsutum]"]
["evm.TU.Gh_A09G1575",1.339093,1.469698,5.277759,2.145461,1.258943,3.411931,"[R]","General function prediction only","Alpha-dioxygenase 2 (Precursor) GN=F25P22.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Peroxidase [Gossypium arboreum]"]
["evm.TU.Gh_A09G2408",1.588805,1.546926,0.640372,0.438053,1.60071,0.666556,"[O]","Posttranslational modification, protein turnover, chaperones","Probable glutathione peroxidase 2 GN=GPX2 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","glutathione peroxidase, putative [Ricinus communis] "]
["evm.TU.Gh_A10G1627",2.519879,2.861651,1.629535,1.054223,1.651355,0.776032,"--","--","Peroxidase 4 {ECO:0000250|UniProtKB:Q42578} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein F383_17561 [Gossypium arboreum]"]
["evm.TU.Gh_A12G2086",3.542239,4.69318,7.794756,3.389513,3.035535,6.40062,"[O]","Posttranslational modification, protein turnover, chaperones","Probable glutathione peroxidase 8 GN=GPX8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative glutathione peroxidase 8 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_A13G2312",1.533301,2.13733,0.740857,1.053322,2.303386,0.9267,"[G]","Carbohydrate transport and metabolism","Peroxidase (Precursor) GN=PAP26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","PAP26 [Gossypium hirsutum]"]
["evm.TU.Gh_D01G1632",11.496631,6.69069,4.674316,12.558675,5.501196,5.498926,"--","--","L-ascorbate peroxidase 3, peroxisomal (Precursor) GN=M4E13.60 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","ascorbate peroxidase [Gossypium hirsutum] "]
["evm.TU.Gh_D01G1726",0.559789,0.511791,0.247953,0.134408,1.253333,0,"--","--","Peroxidase 43 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D02G1110",0.340809,0,0,0.323822,0,0,"--","--","Probable peroxidase 61 (Precursor) GN=MZF18.4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","G","Carbohydrate transport and metabolism","Peroxidase superfamily protein [Theobroma cacao] "]
["evm.TU.Gh_D03G0074",0.561949,0.836909,0.447321,0.43688,0.714384,0.611514,"--","--","Probable L-ascorbate peroxidase 3 GN=APX3 OS=Oryza sativa subsp. indica (Rice) PE=2 SV=1","R","General function prediction only","Ascorbate peroxidase isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D03G0246",0.256344,0.326682,0.456901,0.216693,0.280002,1.221997,"--","--","Peroxidase 73 (Precursor) GN=K8K14.13 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 51 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D03G1381",0.100666,0.334275,0.466284,0.439901,0.523814,0.736743,"--","--","Peroxidase 4 {ECO:0000250|UniProtKB:Q42578} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=1","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D03G1382",0.416343,1.388391,2.770355,1.193114,1.070072,1.296331,"--","--","Peroxidase 4 {ECO:0000250|UniProtKB:Q42578} (Precursor) OS=Vitis vinifera (Grape) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 4 [Gossypium arboreum]"]
["evm.TU.Gh_D04G0497",0.626868,0.288184,0.28015,0.90176,1.880534,1.419829,"[R]","General function prediction only","Alpha-dioxygenase 1 (Precursor) GN=T13O15.6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","Peroxidase superfamily protein isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D04G1101",0.041475,0.040774,0.17534,0.284822,0.263487,0.541341,"--","--","Peroxidase 21 (Precursor) GN=T2N18.11 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase superfamily protein [Theobroma cacao] "]
["evm.TU.Gh_D05G0626",0.089834,0,0.021313,0,0.451493,0,"--","--","Peroxidase 46 (Precursor) GN=F28M20.50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D05G1251",1.347028,0.616123,1.735057,2.385932,1.239554,3.410574,"[O]","Posttranslational modification, protein turnover, chaperones","Peroxiredoxin-2B GN=F12P19.14 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Thioredoxin-dependent peroxidase 1 isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D05G1498",0.537936,0.394161,0,0.017964,0.527732,0.015662,"--","--","Peroxidase 19 (Precursor) GN=T14G11.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 19, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D05G1626",254.726925,244.672291,208.800121,162.510679,185.368332,125.123312,"--","--","Peroxidase 42 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=2","G","Carbohydrate transport and metabolism","peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D06G0413",3.040721,4.922803,3.493339,2.863225,3.758264,1.409555,"--","--","L-ascorbate peroxidase T, chloroplastic (Precursor) GN=APXT OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","R","General function prediction only","L-ascorbate peroxidase T, chloroplastic -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D06G1049",6.012853,3.051804,3.964284,3.322276,3.085001,3.359579,"--","--","Putative L-ascorbate peroxidase 6 GN=APX6 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Putative L-ascorbate peroxidase 6 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D06G1200",0.081618,0.27206,0.333341,0.376467,0.616659,0.280363,"--","--","Peroxidase 12 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 12 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D07G0326",12.73297,12.03942,8.546856,18.936321,12.174615,15.22352,"[O]","Posttranslational modification, protein turnover, chaperones","Phospholipid hydroperoxide glutathione peroxidase, chloroplastic (Precursor) OS=Pisum sativum (Garden pea) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D07G0331",0,0,0,0,0.713334,0,"--","--","Peroxidase 46 (Precursor) GN=F28M20.50 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=1","G","Carbohydrate transport and metabolism","Peroxidase superfamily protein [Theobroma cacao] "]
["evm.TU.Gh_D07G2217",4.138748,1.137277,0.407294,0.605362,1.053253,0.358584,"--","--","Peroxidase 31 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D08G0734",1.504018,1.164643,1.789201,0.476809,1.09703,0.504822,"[O]","Posttranslational modification, protein turnover, chaperones","Probable glutathione peroxidase 4 GN=GPX4 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative glutathione peroxidase 4 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D08G0832",10.478442,16.543615,12.349382,5.2063,11.618752,10.691727,"--","--","Peroxidase 15 {ECO:0000303|PubMed:17936696} (Precursor) OS=Ipomoea batatas (Sweet potato) PE=1 SV=1","G","Carbohydrate transport and metabolism","apoplastic anionic gaiacol peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D08G1956",16.485138,27.647669,47.813923,20.343204,22.940203,33.661335,"[O]","Posttranslational modification, protein turnover, chaperones","Probable phospholipid hydroperoxide glutathione peroxidase GN=CSA OS=Citrus sinensis (Sweet orange) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative phospholipid hydroperoxide glutathione peroxidase [Gossypium arboreum]"]
["evm.TU.Gh_D08G2093",14.568591,12.330127,18.546851,16.602886,10.22868,13.039311,"--","--","L-ascorbate peroxidase, cytosolic GN=APX1 OS=Pisum sativum (Garden pea) PE=1 SV=2","R","General function prediction only","ascorbate peroxidase [Gossypium hirsutum] "]
["evm.TU.Gh_D08G2094",4.432949,9.052986,7.42608,4.66541,8.234701,8.978416,"--","--","L-ascorbate peroxidase, cytosolic GN=APX1 OS=Pisum sativum (Garden pea) PE=1 SV=2","R","General function prediction only","L-ascorbate peroxidase 2, cytosolic [Gossypium arboreum]"]
["evm.TU.Gh_D08G2173",0.748035,1.381688,1.348002,0.609335,1.470388,1.126536,"[J]","Translation, ribosomal structure and biogenesis","Nucleolar complex protein 2 homolog GN=At2g18220 OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","J","Translation, ribosomal structure and biogenesis","Peroxidase 31, putative isoform 1 [Theobroma cacao] "]
["evm.TU.Gh_D08G2420",0.268305,0.21727,0.047718,0.134734,2.308486,0,"--","--","Peroxidase 53 (Precursor) GN=MPH15.8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","POD9 precursor [Gossypium hirsutum]"]
["evm.TU.Gh_D09G1595",1.299316,0.693625,0.575633,0.353331,0.49785,0.401277,"[O]","Posttranslational modification, protein turnover, chaperones","Probable phospholipid hydroperoxide glutathione peroxidase GN=GPXMC1 OS=Mesembryanthemum crystallinum (Common ice plant) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","glutathione peroxidase, putative [Ricinus communis] "]
["evm.TU.Gh_D09G1660",1.211682,0.781643,0.915527,1.243906,1.750987,2.360879,"[R]","General function prediction only","Alpha-dioxygenase 2 (Precursor) GN=F25P22.10 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","R","General function prediction only","Peroxidase [Gossypium arboreum]"]
["evm.TU.Gh_D12G0788",4.484579,5.555113,4.705081,6.369604,7.136426,11.550266,"--","--","Peroxidase 17 (Precursor) GN=F14M13.18 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","gaiacol peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_D12G2260",6.563839,6.753954,5.143942,9.917954,9.265401,13.219482,"[O]","Posttranslational modification, protein turnover, chaperones","Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial (Precursor) GN=T5C23.30 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","putative phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D12G2262",2.691179,4.423458,7.269415,3.616497,3.051214,5.383706,"[O]","Posttranslational modification, protein turnover, chaperones","Probable glutathione peroxidase 8 GN=GPX8 OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative glutathione peroxidase 8 -like protein [Gossypium arboreum]"]
["evm.TU.Gh_D13G2476",4.256419,5.321006,2.832896,2.769767,9.023493,2.511151,"[G]","Carbohydrate transport and metabolism","Peroxidase (Precursor) GN=PAP26 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","G","Carbohydrate transport and metabolism","PAP26 [Gossypium hirsutum]"]
["Cotton_newGene_15678",0.769888,1.459229,0.868073,1.076659,1.003109,1.071711,"--","--","Peroxidase 27 (Precursor) GN=T4P13.12 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Protein CAJ1 [Gossypium arboreum]"]
["evm.TU.Gh_A01G1388",2.924868,2.180809,1.607663,4.464429,2.094064,2.267549,"--","--","L-ascorbate peroxidase 3, peroxisomal (Precursor) GN=M4E13.60 OS=Arabidopsis thaliana (Mouse-ear cress) PE=1 SV=1","R","General function prediction only","ascorbate peroxidase [Gossypium hirsutum] "]
["evm.TU.Gh_A01G1487",0.437821,0.193031,0.118838,0.143151,0.807674,0.01213,"--","--","Peroxidase 43 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=3 SV=2","G","Carbohydrate transport and metabolism","class III peroxidase [Gossypium hirsutum]"]
["evm.TU.Gh_A02G1466",0.020926,0.044257,0.107345,0.033743,0.292903,0.795487,"--","--","Peroxidase 51 (Precursor) OS=Arabidopsis thaliana (Mouse-ear cress) PE=2 SV=1","G","Carbohydrate transport and metabolism","Peroxidase 51 -like protein [Gossypium arboreum]"]